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<td class="page-title-pattern-first-line " style="padding: 0px; border-collapse: collapse; font-family: Arial, sans-serif; font-size: 14px; padding-top: 10px"> <a href="https://hibernate.atlassian.net/browse/HHH" style="color: #3b73af; text-decoration: none">Hibernate ORM</a> / <a href="https://hibernate.atlassian.net/browse/HHH-9564" style="color: #3b73af; text-decoration: none"><img src="cid:jira-generated-image-static-bug-4d675a8a-e387-4f0e-a96a-8e293fe25d95" height="16" width="16" border="0" align="absmiddle" alt="Bug" style="vertical-align: text-bottom" /></a> <a href="https://hibernate.atlassian.net/browse/HHH-9564" style="color: #3b73af; text-decoration: none">HHH-9564</a>
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Issue Type:
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<td class="has-icon" style="padding: 0px; border-collapse: collapse; font: normal 14px/20px Arial, sans-serif; padding: 2px 0 2px 5px; vertical-align: top"> <img src="cid:jira-generated-image-static-bug-4d675a8a-e387-4f0e-a96a-8e293fe25d95" height="16" width="16" border="0" align="absmiddle" alt="Bug" style="vertical-align: text-bottom" /> Bug
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Affects Versions:
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4.3.8, 4.3.7, 4.3.6
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Assignee:
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Unassigned
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Components:
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core, entity-manager
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Created:
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11/Jan/2015 09:08 AM
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Environment:
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Glassfish 4.1, postgres 9.2, all OS
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Priority:
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<td class="has-icon" style="padding: 0px; border-collapse: collapse; font: normal 14px/20px Arial, sans-serif; padding: 2px 0 2px 5px; vertical-align: top"> <img src="cid:jira-generated-image-static-critical-6a6dc323-c5d5-4091-9991-6017244d4cd2" height="16" width="16" border="0" align="absmiddle" alt="Critical" style="vertical-align: text-bottom" /> Critical
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Reporter:
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<td style="padding: 0px; border-collapse: collapse; font: normal 14px/20px Arial, sans-serif; padding: 2px 0 2px 5px; vertical-align: top"> <a class="user-hover" rel="geocharus" id="email_geocharus" href="https://hibernate.atlassian.net/secure/ViewProfile.jspa?name=geocharus" style="color:#6c797f;; color: #3b73af; text-decoration: none">Geoff Ruscoe</a>
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<p style="margin-top:0;margin-bottom:10px;; margin: 10px 0 0 0">Our Ear Project (ejb, jpa) contains hibernate core and entity manager and we use that for our persistence layer (instead of the eclipse link that is built in). This has worked for several years. The application also contains reflections 0.9.8 which like hibernate depends on dom4j 1.6.1. When trying to upgrade from 4.3.5 to 4.3.6 (or 7 or 8) the application fails to start due to a classloader issue:</p>
<p style="margin-top:0;margin-bottom:10px;; margin: 10px 0 0 0">Caused by: org.dom4j.DocumentException: org.dom4j.DocumentFactory cannot be cast to org.dom4j.DocumentFactory Nested exception: org.dom4j.DocumentFactory cannot be cast to org.dom4j.DocumentFactory</p>
<p style="margin-top:0;margin-bottom:10px;; margin: 10px 0 0 0">I found a post related to dom4j and osgi class loader issues, but apparently something that was changed in 4.3.6 has broken it. I have tried to several options to work around this issue and aside from removing everything that has a dependency on dom4j have come to the conclusion there is no way to move forward without a fix. </p>
<p style="margin-top:0;margin-bottom:10px;; margin: 10px 0 0 0">I have found an interesting except that seems related (<a href="http://gurke300.gitbooks.io/osgi-with-spring-4-and-hibernate-4/content/hibernate_in_osgi/README.html" class="external-link" rel="nofollow" style="color: #3b73af; text-decoration: none">http://gurke300.gitbooks.io/osgi-with-spring-4-and-hibernate-4/content/hibernate_in_osgi/README.html</a>). I appologize for not having a test case at this point, but I am hoping that this issue will be known well enough that it will not be necessary.</p>
<p style="margin-top:0;margin-bottom:10px;; margin: 10px 0 0 0">If there is anything I can try – a workaround or patch – please let me know and I will try immediately.</p>
<p style="margin-top:0;margin-bottom:10px;; margin: 10px 0 0 0">Full Stack trace:</p>
<p style="margin-top:0;margin-bottom:10px;; margin: 10px 0 0 0">2015-01-10 13:16:13.553 - :: ERROR <span class="error">[admin-listener(2)]</span> javax.enterprise.system.core:114 - Exception while invoking class org.glassfish.persistence.jpa.JPADeployer prepare method<br /> 2015-01-10 13:16:13.563 - :: ERROR <span class="error">[admin-listener(2)]</span> javax.enterprise.system.core:114 - Exception while preparing the app<br /> 2015-01-10 13:16:13.604 - :: ERROR <span class="error">[admin-listener(2)]</span> javax.enterprise.system.core:447 - Exception during lifecycle processing<br /> org.hibernate.InvalidMappingException: Error while parsing file: META-INF/orm.xml<br /> at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.buildHibernateConfiguration(EntityManagerFactoryBuilderImpl.java:1182) ~<span class="error">[hibernate-entitymanager-4.3.8.Final.jar:na]</span><br /> at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl$4.perform(EntityManagerFactoryBuilderImpl.java:848) ~<span class="error">[hibernate-entitymanager-4.3.8.Final.jar:na]</span><br /> at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl$4.perform(EntityManagerFactoryBuilderImpl.java:845) ~<span class="error">[hibernate-entitymanager-4.3.8.Final.jar:na]</span><br /> at org.hibernate.boot.registry.classloading.internal.ClassLoaderServiceImpl.withTccl(ClassLoaderServiceImpl.java:398) ~<span class="error">[hibernate-core-4.3.8.Final.jar:na]</span><br /> at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.build(EntityManagerFactoryBuilderImpl.java:844) ~<span class="error">[hibernate-entitymanager-4.3.8.Final.jar:na]</span><br /> at org.hibernate.jpa.HibernatePersistenceProvider.createContainerEntityManagerFactory(HibernatePersistenceProvider.java:152) ~<span class="error">[hibernate-entitymanager-4.3.8.Final.jar:na]</span><br /> at org.glassfish.persistence.jpa.PersistenceUnitLoader.loadPU(PersistenceUnitLoader.java:199) ~<span class="error">[jpa-container.jar:na]</span><br /> at org.glassfish.persistence.jpa.PersistenceUnitLoader.<init>(PersistenceUnitLoader.java:107) ~<span class="error">[jpa-container.jar:na]</span><br /> at org.glassfish.persistence.jpa.JPADeployer$1.visitPUD(JPADeployer.java:223) ~<span class="error">[jpa-container.jar:na]</span><br /> at org.glassfish.persistence.jpa.JPADeployer$PersistenceUnitDescriptorIterator.iteratePUDs(JPADeployer.java:510) ~<span class="error">[jpa-container.jar:na]</span><br /> at org.glassfish.persistence.jpa.JPADeployer.createEMFs(JPADeployer.java:230) ~<span class="error">[jpa-container.jar:na]</span><br /> at org.glassfish.persistence.jpa.JPADeployer.prepare(JPADeployer.java:168) ~<span class="error">[jpa-container.jar:na]</span><br /> at com.sun.enterprise.v3.server.ApplicationLifecycle.prepareModule(ApplicationLifecycle.java:925) <span class="error">[kernel.jar:na]</span><br /> at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:434) <span class="error">[kernel.jar:na]</span><br /> at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:219) <span class="error">[kernel.jar:na]</span><br /> at org.glassfish.deployment.admin.DeployCommand.execute(DeployCommand.java:491) <span class="error">[deployment-admin.jar:na]</span><br /> at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:539) <span class="error">[kernel.jar:na]</span><br /> at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:535) <span class="error">[kernel.jar:na]</span><br /> at java.security.AccessController.doPrivileged(Native Method) <span class="error">[na:1.8.0_25]</span><br /> at javax.security.auth.Subject.doAs(Subject.java:360) <span class="error">[na:1.8.0_25]</span><br /> at com.sun.enterprise.v3.admin.CommandRunnerImpl$2.execute(CommandRunnerImpl.java:534) <span class="error">[kernel.jar:na]</span><br /> at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:565) <span class="error">[kernel.jar:na]</span><br /> at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:557) <span class="error">[kernel.jar:na]</span><br /> at java.security.AccessController.doPrivileged(Native Method) <span class="error">[na:1.8.0_25]</span><br /> at javax.security.auth.Subject.doAs(Subject.java:360) <span class="error">[na:1.8.0_25]</span><br /> at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:556) <span class="error">[kernel.jar:na]</span><br /> at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:1464) <span class="error">[kernel.jar:na]</span><br /> at com.sun.enterprise.v3.admin.CommandRunnerImpl.access$1300(CommandRunnerImpl.java:109) <span class="error">[kernel.jar:na]</span><br /> at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1846) <span class="error">[kernel.jar:na]</span><br /> at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1722) <span class="error">[kernel.jar:na]</span><br /> at org.glassfish.admin.rest.resources.admin.CommandResource.executeCommand(CommandResource.java:404) <span class="error">[rest-service.jar:na]</span><br /> at org.glassfish.admin.rest.resources.admin.CommandResource.execCommandSimpInMultOut(CommandResource.java:234) <span class="error">[rest-service.jar:na]</span><br /> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~<span class="error">[na:1.8.0_25]</span><br /> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) ~<span class="error">[na:1.8.0_25]</span><br /> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~<span class="error">[na:1.8.0_25]</span><br /> at java.lang.reflect.Method.invoke(Method.java:483) ~<span class="error">[na:1.8.0_25]</span><br /> at org.glassfish.jersey.server.model.internal.ResourceMethodInvocationHandlerFactory$1.invoke(ResourceMethodInvocationHandlerFactory.java:81) <span class="error">[jersey-server.jar:na]</span><br /> at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher$1.run(AbstractJavaResourceMethodDispatcher.java:151) <span class="error">[jersey-server.jar:na]</span><br /> at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.invoke(AbstractJavaResourceMethodDispatcher.java:171) <span class="error">[jersey-server.jar:na]</span><br /> at org.glassfish.jersey.server.model.internal.JavaResourceMethodDispatcherProvider$ResponseOutInvoker.doDispatch(JavaResourceMethodDispatcherProvider.java:152) <span class="error">[jersey-server.jar:na]</span><br /> at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.dispatch(AbstractJavaResourceMethodDispatcher.java:104) <span class="error">[jersey-server.jar:na]</span><br /> at org.glassfish.jersey.server.model.ResourceMethodInvoker.invoke(ResourceMethodInvoker.java:387) <span class="error">[jersey-server.jar:na]</span><br /> at org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:331) <span class="error">[jersey-server.jar:na]</span><br /> at org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:103) <span class="error">[jersey-server.jar:na]</span><br /> at org.glassfish.jersey.server.ServerRuntime$1.run(ServerRuntime.java:271) <span class="error">[jersey-server.jar:na]</span><br /> at org.glassfish.jersey.internal.Errors$1.call(Errors.java:271) <span class="error">[jersey-common.jar:na]</span><br /> at org.glassfish.jersey.internal.Errors$1.call(Errors.java:267) <span class="error">[jersey-common.jar:na]</span><br /> at org.glassfish.jersey.internal.Errors.process(Errors.java:315) <span class="error">[jersey-common.jar:na]</span><br /> at org.glassfish.jersey.internal.Errors.process(Errors.java:297) <span class="error">[jersey-common.jar:na]</span><br /> at org.glassfish.jersey.internal.Errors.process(Errors.java:267) <span class="error">[jersey-common.jar:na]</span><br /> at org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:297) <span class="error">[jersey-common.jar:na]</span><br /> at org.glassfish.jersey.server.ServerRuntime.process(ServerRuntime.java:254) <span class="error">[jersey-server.jar:na]</span><br /> at org.glassfish.jersey.server.ApplicationHandler.handle(ApplicationHandler.java:1028) <span class="error">[jersey-server.jar:na]</span><br /> at org.glassfish.jersey.grizzly2.httpserver.GrizzlyHttpContainer.service(GrizzlyHttpContainer.java:365) <span class="error">[jersey-container-grizzly2-http.jar:na]</span><br /> at org.glassfish.admin.rest.adapter.JerseyContainerCommandService$3.service(JerseyContainerCommandService.java:173) <span class="error">[rest-service.jar:na]</span><br /> at org.glassfish.admin.rest.adapter.RestAdapter.service(RestAdapter.java:179) <span class="error">[rest-service.jar:na]</span><br /> at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:459) <span class="error">[kernel.jar:na]</span><br /> at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:167) <span class="error">[kernel.jar:na]</span><br /> at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:201) <span class="error">[nucleus-grizzly-all.jar:na]</span><br /> at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:175) <span class="error">[nucleus-grizzly-all.jar:na]</span><br /> at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:235) <span class="error">[nucleus-grizzly-all.jar:na]</span><br /> at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119) <span class="error">[nucleus-grizzly-all.jar:na]</span><br /> at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:284) <span class="error">[nucleus-grizzly-all.jar:na]</span><br /> at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:201) <span class="error">[nucleus-grizzly-all.jar:na]</span><br /> at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:133) <span class="error">[nucleus-grizzly-all.jar:na]</span><br /> at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:112) <span class="error">[nucleus-grizzly-all.jar:na]</span><br /> at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77) <span class="error">[nucleus-grizzly-all.jar:na]</span><br /> at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:561) <span class="error">[nucleus-grizzly-all.jar:na]</span><br /> at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:112) <span class="error">[nucleus-grizzly-all.jar:na]</span><br /> at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:117) <span class="error">[nucleus-grizzly-all.jar:na]</span><br /> at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:56) <span class="error">[nucleus-grizzly-all.jar:na]</span><br /> at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:137) <span class="error">[nucleus-grizzly-all.jar:na]</span><br /> at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:565) <span class="error">[nucleus-grizzly-all.jar:na]</span><br /> at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:545) <span class="error">[nucleus-grizzly-all.jar:na]</span><br /> at java.lang.Thread.run(Thread.java:745) <span class="error">[na:1.8.0_25]</span><br /> Caused by: org.hibernate.InvalidMappingException: Unable to read XML<br /> at org.hibernate.internal.util.xml.MappingReader.legacyReadMappingDocument(MappingReader.java:375) ~<span class="error">[hibernate-core-4.3.8.Final.jar:na]</span><br /> at org.hibernate.internal.util.xml.MappingReader.readMappingDocument(MappingReader.java:304) ~<span class="error">[hibernate-core-4.3.8.Final.jar:na]</span><br /> at org.hibernate.cfg.Configuration.add(Configuration.java:518) ~<span class="error">[hibernate-core-4.3.8.Final.jar:na]</span><br /> at org.hibernate.cfg.Configuration.add(Configuration.java:514) ~<span class="error">[hibernate-core-4.3.8.Final.jar:na]</span><br /> at org.hibernate.cfg.Configuration.add(Configuration.java:688) ~<span class="error">[hibernate-core-4.3.8.Final.jar:na]</span><br /> at org.hibernate.cfg.Configuration.addInputStream(Configuration.java:726) ~<span class="error">[hibernate-core-4.3.8.Final.jar:na]</span><br /> at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.buildHibernateConfiguration(EntityManagerFactoryBuilderImpl.java:1177) ~<span class="error">[hibernate-entitymanager-4.3.8.Final.jar:na]</span><br /> ... 74 common frames omitted<br /> Caused by: org.dom4j.DocumentException: org.dom4j.DocumentFactory cannot be cast to org.dom4j.DocumentFactory Nested exception: org.dom4j.DocumentFactory cannot be cast to org.dom4j.DocumentFactory<br /> at org.dom4j.io.SAXReader.read(SAXReader.java:484) ~<span class="error">[dom4j-1.6.1-PJI.jar:na]</span><br /> at org.hibernate.internal.util.xml.MappingReader.legacyReadMappingDocument(MappingReader.java:325) ~<span class="error">[hibernate-core-4.3.8.Final.jar:na]</span><br /> ... 80 common frames omitted</p>
</td>
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</table>
</td>
</tr>
<tr>
<td class="email-content-main mobile-expand " style="padding: 0px; border-collapse: collapse; border-left: 1px solid #ccc; border-right: 1px solid #ccc; border-top: 0; border-bottom: 0; padding: 0 15px 0 16px; background-color: #fff">
<table id="actions-pattern" cellspacing="0" cellpadding="0" border="0" width="100%" style="border-collapse: collapse; mso-table-lspace: 0pt; mso-table-rspace: 0pt; font-family: Arial, sans-serif; font-size: 14px; line-height: 20px; mso-line-height-rule: exactly; mso-text-raise: 1px">
<tr>
<td id="actions-pattern-container" valign="middle" style="padding: 0px; border-collapse: collapse; padding: 10px 0 10px 24px; vertical-align: middle; padding-left: 0">
<table align="left" style="border-collapse: collapse; mso-table-lspace: 0pt; mso-table-rspace: 0pt">
<tr>
<td class="actions-pattern-action-icon-container" style="padding: 0px; border-collapse: collapse; font-family: Arial, sans-serif; font-size: 14px; line-height: 20px; mso-line-height-rule: exactly; mso-text-raise: 0px; vertical-align: middle"> <a href="https://hibernate.atlassian.net/browse/HHH-9564#add-comment" target="_blank" title="Add Comment" style="color: #3b73af; text-decoration: none"> <img class="actions-pattern-action-icon-image" src="cid:jira-generated-image-static-comment-icon-0a564543-3991-4e32-a16c-2939cf196c05" alt="Add Comment" title="Add Comment" height="16" width="16" border="0" style="vertical-align: middle" /> </a>
</td>
<td class="actions-pattern-action-text-container" style="padding: 0px; border-collapse: collapse; font-family: Arial, sans-serif; font-size: 14px; line-height: 20px; mso-line-height-rule: exactly; mso-text-raise: 4px; padding-left: 5px"> <a href="https://hibernate.atlassian.net/browse/HHH-9564#add-comment" target="_blank" title="Add Comment" style="color: #3b73af; text-decoration: none">Add Comment</a>
</td>
</tr>
</table>
</td>
</tr>
</table>
</td>
</tr>
<!-- there needs to be content in the cell for it to render in some clients -->
<tr>
<td class="email-content-rounded-bottom mobile-expand" style="padding: 0px; border-collapse: collapse; color: #fff; padding: 0 15px 0 16px; height: 5px; line-height: 5px; background-color: #fff; border-top: 0; border-left: 1px solid #ccc; border-bottom: 1px solid #ccc; border-right: 1px solid #ccc; border-bottom-right-radius: 5px; border-bottom-left-radius: 5px; mso-line-height-rule: exactly">
</td>
</tr>
</table>
</td>
</tr>
<tr>
<td id="footer-pattern" style="padding: 0px; border-collapse: collapse; padding: 12px 20px">
<table id="footer-pattern-container" cellspacing="0" cellpadding="0" border="0" style="border-collapse: collapse; mso-table-lspace: 0pt; mso-table-rspace: 0pt">
<tr>
<td id="footer-pattern-text" class="mobile-resize-text" width="100%" style="padding: 0px; border-collapse: collapse; color: #999; font-size: 12px; line-height: 18px; font-family: Arial, sans-serif; mso-line-height-rule: exactly; mso-text-raise: 2px">
This message was sent by Atlassian JIRA <span id="footer-build-information">(v6.4-OD-12-026#64007-<span title="039f45b47f55c447e3f50e58b0fe607132611944" data-commit-id="039f45b47f55c447e3f50e58b0fe607132611944}">sha1:039f45b</span>)</span>
</td>
<td id="footer-pattern-logo-desktop-container" valign="top" style="padding: 0px; border-collapse: collapse; padding-left: 20px; vertical-align: top">
<table style="border-collapse: collapse; mso-table-lspace: 0pt; mso-table-rspace: 0pt">
<tr>
<td id="footer-pattern-logo-desktop-padding" style="padding: 0px; border-collapse: collapse; padding-top: 3px"> <img id="footer-pattern-logo-desktop" src="cid:jira-generated-image-static-footer-desktop-logo-ab696bcf-d8b9-4473-a48f-926254173fd1" alt="Atlassian logo" title="Atlassian logo" width="169" height="36" class="image_fix" />
</td>
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</table>
</td>
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</table>
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