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<div class=Section1>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>
Call for Papers<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>
4th International Workshop on <o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'> Semantic Web Applications and Tools for the
Life Sciences <o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=NL
style='font-size:10.0pt'>
SWAT4LS 2011<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=FR
style='font-size:10.0pt'>
</span></font><span lang=NL><a href="http://www.swat4ls.org/2011/"><span
lang=FR>http://www.swat4ls.org/2011/</span></a></span><span lang=FR><o:p></o:p></span></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>
Dec 7th-9th, 2011, <st1:place w:st="on"><st1:City w:st="on">London</st1:City>,
<st1:country-region w:st="on">UK</st1:country-region></st1:place><o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'> <o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'> In cooperation with ACM SIG
Bioinformatics, W3C<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'> ++++ Submission Deadline in one Week - Oct 7,
2011 ++++<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>News:<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>*********************************************************************<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>* Proceedings will be published and listed in the ACM
ICP Series *<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>* SWAT4LS in cooperation with the ACM SIG
Bioinformatics
*<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>* SWAT4LS supported by
W3C
*<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>* Journal Special Issue for extended and revised
accepted papers *<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>* Program includes Hackathon, Tutorials, Keynotes,
Demos, Panel *<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>* <a
href="http://www.swat4ls.org/workshops/london2011/scientific-programme/">http://www.swat4ls.org/workshops/london2011/scientific-programme/</a>
*<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>* Sponsored by BBSRC, NCBO, BioMed
Central
*<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>*********************************************************************<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>Overview<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt;font-family:"Courier New"'>======================================================<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>Since 2008, SWAT4LS is a workshop that has provided a
platform for the presentation and discussion of the benefits and limits of
applying web-based information systems and semantic technologies in Biomedical
Informatics and Computational Biology.<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>Growing steadily each year as Semantic Web
applications become more widespread, SWAT4LS has been in Edinburgh 2008,
Amsterdam 2009, and Berlin 2010, with <st1:place w:st="on"><st1:City w:st="on">London</st1:City></st1:place>
planned for 2011. The last edition of SWAT4LS was held in <st1:place w:st="on"><st1:State
w:st="on">Berlin</st1:State></st1:place>, on December 10th, 2010 with more
than 100 attendees. It was preceded by two days of tutorials and other
associated events.<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>We are confident that the next edition of SWAT4LS will
provide the same open and stimulating environment that continues to bring
together researchers, both developers and users, from domains spanning health
care, life sciences, clinical research and translational medicine, to discuss
goals, current limits and real experiences in the use of Semantic Web
technologies in Life Sciences.<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>Rationale<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt;font-family:"Courier New"'>======================================================<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>The Web is a key medium for information publishing,
and Web-based information systems play a key role in biomedical information
exchange and integration. At the same time, the variety and complexity of
biomedical information call for the adoption of semantic-based solutions. The
Semantic Web provides a set of technologies and standards that are key to
supporting semantic markup, ontology development, distributed information
resources and collaborative social environments. Altogether the adoption of the
Web-based semantic-enabled technologies in the Life Sciences has a potential
impact on the future of publishing, scientific communication, and biomedical
research. This workshop will provide a venue to present and discuss benefits
and limits of the adoption of these technologies and tools in biomedical
informatics and computational biology. It will serve as a showcase for
experiences, information resources, tools development and applications.<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>Topics<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt;font-family:"Courier New"'>======================================================<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>Topics of interest include, but are not limited to:<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>- Standards, Technologies, Tools for the Semantic Web<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>o Semantic Web standards and new proposals (e.g.: RDF,
OWL, SKOS, SPIN, RuleML)<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>o Tools for ontology management, editing and
versioning<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>o RDF stores, Reasoners, query and visualization
systems<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>o Formal approaches to large biomedical knowledge
bases<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>o Tools for semantic-enabled web publication<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>o Alternative approaches to integrate semantic
representations and web based solutions<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>- Systems for a Semantic Web for Bioinformatics<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>o Biomedical knowledge bases on the Semantic Web<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>o EHR and clinical research data interoperability and
reuse<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>o Clinical data pipelines for supporting tailored
therapy and molecular medicine<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>o Tracking genotype and phenotype assertions with
provenance<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>o Semantic biomedical Web Services<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>o Semantics aware Biological Data Integration Systems<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>o Semantic-enabled biomedical information systems and
solutions<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>o Linked Data for biomedical research, drug
development and discovery<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>- Existing and prospective applications of the
Semantic Web for Bioinformatics<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>o Semantic Wikis<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>o Semantic collaborative research environments<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>o Semantic crowdsourcing and collective intelligence<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>o Alternative approaches to biomedical metadata generation
and management<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>o Case studies, use cases, and scenarios<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>Type of contributions<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt;font-family:"Courier New"'>======================================================<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>The following possible contributions are sought:<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>- Research papers<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>- Position papers<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>- Posters<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>- Software demos<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>Proceedings<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt;font-family:"Courier New"'>======================================================<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>Accepted papers will be published as proceedings in
the ACM ICP Series (The publication will be available under the following ISBN
number: 978-1-4503-1076-5).<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>Special issue<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt;font-family:"Courier New"'>======================================================<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>Authors of accepted contributions to the upcoming
edition of SWAT4LS will be invited to submit an extended and revised version of
their contributions for a special issue of an international peer-reviewed
scientific journal (under definition, special issues of SWAT4LS have appeared
in the past in BMC Bioinformatics and in the BMC Journal of Biomedical
Semantics.)<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>Deadlines<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt;font-family:"Courier New"'>======================================================<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>- Papers submission deadline: 7 October 2011<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>- Posters and demo submission deadline: 31 October
2011<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>- Communication of acceptance: 7 November 2011<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>- Camera ready: 21 November 2011<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>Instructions<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt;font-family:"Courier New"'>======================================================<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>All papers and posters must be in English, formatted
according to ACM IPCS guidelines
(http://www.acm.org/sigs/publications/proceedings-templates) and submitted in
pdf format.<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>- Submissions for papers should report original
research, and should be between 4 and 8 pages.<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>- Submissions for position papers should report
qualified opinions, recommendations or conclusions, and should be between 1 and
3 pages.<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>- Submissions for posters should be between 1 and 2
pages.<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>- Submissions for software demo proposals should also
be between 1 and 2 pages.<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>Submission<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt;font-family:"Courier New"'>======================================================<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>All submissions are handled via the EasyChair
submission system
( https://www.easychair.org/conferences/?conf=swat4ls2011).<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'>To ensure high quality, submitted papers will be
carefully peer-reviewed by at least three members of the Scientific Committee.<o:p></o:p></span></font></p>
<p class=MsoPlainText><font size=2 face="Courier New"><span lang=EN-GB
style='font-size:10.0pt'><o:p> </o:p></span></font></p>
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