Message Title

I have the same steps :
1. Start the application so that the schema is created.
2. Start the application once again, it crashes upon starting with

2017-12-14 12:12:01.156  INFO 8060 --- [           main] rmationExtractorJdbcDatabaseMetaDataImpl : HHH000262: Table not found: preference
2017-12-14 12:12:01.156  INFO 8060 --- [           main] rmationExtractorJdbcDatabaseMetaDataImpl : HHH000262: Table not found: groupe
2017-12-14 12:12:01.156  WARN 8060 --- [           main] ationConfigEmbeddedWebApplicationContext : Exception encountered during context initialization - cancelling refresh attempt: o
rg.springframework.beans.factory.BeanCreationException: Error creating bean with name 'entityManagerFactory' defined in class path resource [org/springframework/boot/autoconfigure/orm
/jpa/HibernateJpaAutoConfiguration.class]: Invocation of init method failed; nested exception is javax.persistence.PersistenceException: [PersistenceUnit: default] Unable to build Hib
ernate SessionFactory
2017-12-14 12:12:01.156  INFO 8060 --- [           main] o.apache.catalina.core.StandardService   : Stopping service [Tomcat]
2017-12-14 12:12:01.156  INFO 8060 --- [           main] utoConfigurationReportLoggingInitializer :

Error starting ApplicationContext. To display the auto-configuration report re-run your application with 'debug' enabled.
2017-12-14 12:12:01.172 ERROR 8060 --- [           main] o.s.boot.SpringApplication               : Application startup failed

org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'entityManagerFactory' defined in class path resource [org/springframework/boot/autoconfigure/or
m/jpa/HibernateJpaAutoConfiguration.class]: Invocation of init method failed; nested exception is javax.persistence.PersistenceException: [PersistenceUnit: default] Unable to build Hi
bernate SessionFactory
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1628) ~[spring-beans-4.3.13.RELEASE.jar:
4.3.13.RELEASE]
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:555) ~[spring-beans-4.3.13.RELEASE.jar:4.3
.13.RELEASE]
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:483) ~[spring-beans-4.3.13.RELEASE.jar:4.3.1
3.RELEASE]
        at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:306) ~[spring-beans-4.3.13.RELEASE.jar:4.3.13.RELEASE]
        at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230) ~[spring-beans-4.3.13.RELEASE.jar:4.3.13.RELEASE]

        at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:302) ~[spring-beans-4.3.13.RELEASE.jar:4.3.13.RELEASE]
        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197) ~[spring-beans-4.3.13.RELEASE.jar:4.3.13.RELEASE]
        at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1080) ~[spring-context-4.3.13.RELEASE.jar:4.3.13.RELEASE]
        at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:857) ~[spring-context-4.3.13.RELEASE.jar:4.3.
13.RELEASE]
        at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:543) ~[spring-context-4.3.13.RELEASE.jar:4.3.13.RELEASE]
        at org.springframework.boot.context.embedded.EmbeddedWebApplicationContext.refresh(EmbeddedWebApplicationContext.java:122) ~[spring-boot-1.5.9.RELEASE.jar:1.5.9.RELEASE]
        at org.springframework.boot.SpringApplication.refresh(SpringApplication.java:693) [spring-boot-1.5.9.RELEASE.jar:1.5.9.RELEASE]
        at org.springframework.boot.SpringApplication.refreshContext(SpringApplication.java:360) [spring-boot-1.5.9.RELEASE.jar:1.5.9.RELEASE]
        at org.springframework.boot.SpringApplication.run(SpringApplication.java:303) [spring-boot-1.5.9.RELEASE.jar:1.5.9.RELEASE]
        at org.springframework.boot.SpringApplication.run(SpringApplication.java:1118) [spring-boot-1.5.9.RELEASE.jar:1.5.9.RELEASE]
        at org.springframework.boot.SpringApplication.run(SpringApplication.java:1107) [spring-boot-1.5.9.RELEASE.jar:1.5.9.RELEASE]
        at com.amplitude.clinirecord.ClinirecordApplication.main(ClinirecordApplication.java:12) [classes/:na]
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.8.0_05]
        at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) ~[na:1.8.0_05]
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.8.0_05]
        at java.lang.reflect.Method.invoke(Method.java:483) ~[na:1.8.0_05]
        at org.springframework.boot.maven.AbstractRunMojo$LaunchRunner.run(AbstractRunMojo.java:527) [spring-boot-maven-plugin-1.5.9.RELEASE.jar:1.5.9.RELEASE]
        at java.lang.Thread.run(Thread.java:745) [na:1.8.0_05]
Caused by: javax.persistence.PersistenceException: [PersistenceUnit: default] Unable to build Hibernate SessionFactory
        at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.persistenceException(EntityManagerFactoryBuilderImpl.java:951) ~[hibernate-core-5.2.3.Final.jar:5.2.3.Final]

        at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.build(EntityManagerFactoryBuilderImpl.java:881) ~[hibernate-core-5.2.3.Final.jar:5.2.3.Final]
        at org.springframework.orm.jpa.vendor.SpringHibernateJpaPersistenceProvider.createContainerEntityManagerFactory(SpringHibernateJpaPersistenceProvider.java:60) ~[spring-orm-4.3
.13.RELEASE.jar:4.3.13.RELEASE]
        at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.createNativeEntityManagerFactory(LocalContainerEntityManagerFactoryBean.java:360) ~[spring-orm-4.3.13.REL
EASE.jar:4.3.13.RELEASE]
        at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.buildNativeEntityManagerFactory(AbstractEntityManagerFactoryBean.java:382) ~[spring-orm-4.3.13.RELEASE.jar:4.3.
13.RELEASE]
        at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.afterPropertiesSet(AbstractEntityManagerFactoryBean.java:371) ~[spring-orm-4.3.13.RELEASE.jar:4.3.13.RELEASE]
        at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.afterPropertiesSet(LocalContainerEntityManagerFactoryBean.java:336) ~[spring-orm-4.3.13.RELEASE.jar:4.3.1
3.RELEASE]
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1687) ~[spring-beans-4.3.13.RELEASE.j
ar:4.3.13.RELEASE]
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1624) ~[spring-beans-4.3.13.RELEASE.jar:
4.3.13.RELEASE]
        ... 22 common frames omitted
Caused by: org.hibernate.tool.schema.spi.SchemaManagementException: Attempt to resolve foreign key metadata from JDBC metadata failed to find column mappings for foreign key named [FK
nn0a9ercafmerc1e2bs3ut8mh]
        at org.hibernate.tool.schema.extract.internal.InformationExtractorJdbcDatabaseMetaDataImpl$ForeignKeyBuilderImpl.build(InformationExtractorJdbcDatabaseMetaDataImpl.java:885) ~
[hibernate-core-5.2.3.Final.jar:5.2.3.Final]
        at org.hibernate.tool.schema.extract.internal.InformationExtractorJdbcDatabaseMetaDataImpl$ForeignKeyBuilderImpl.build(InformationExtractorJdbcDatabaseMetaDataImpl.java:866) ~
[hibernate-core-5.2.3.Final.jar:5.2.3.Final]
        at org.hibernate.tool.schema.extract.internal.InformationExtractorJdbcDatabaseMetaDataImpl.getForeignKeys(InformationExtractorJdbcDatabaseMetaDataImpl.java:849) ~[hibernate-co
re-5.2.3.Final.jar:5.2.3.Final]
        at org.hibernate.tool.schema.extract.internal.TableInformationImpl.foreignKeys(TableInformationImpl.java:97) ~[hibernate-core-5.2.3.Final.jar:5.2.3.Final]
        at org.hibernate.tool.schema.extract.internal.TableInformationImpl.getForeignKey(TableInformationImpl.java:108) ~[hibernate-core-5.2.3.Final.jar:5.2.3.Final]
        at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.findMatchingForeignKey(AbstractSchemaMigrator.java:446) ~[hibernate-core-5.2.3.Final.jar:5.2.3.Final]
        at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.applyForeignKeys(AbstractSchemaMigrator.java:419) ~[hibernate-core-5.2.3.Final.jar:5.2.3.Final]
        at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.performMigration(AbstractSchemaMigrator.java:245) ~[hibernate-core-5.2.3.Final.jar:5.2.3.Final]
        at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.doMigration(AbstractSchemaMigrator.java:110) ~[hibernate-core-5.2.3.Final.jar:5.2.3.Final]
        at org.hibernate.tool.schema.spi.SchemaManagementToolCoordinator.performDatabaseAction(SchemaManagementToolCoordinator.java:177) ~[hibernate-core-5.2.3.Final.jar:5.2.3.Final]
        at org.hibernate.tool.schema.spi.SchemaManagementToolCoordinator.process(SchemaManagementToolCoordinator.java:66) ~[hibernate-core-5.2.3.Final.jar:5.2.3.Final]
        at org.hibernate.internal.SessionFactoryImpl.<init>(SessionFactoryImpl.java:309) ~[hibernate-core-5.2.3.Final.jar:5.2.3.Final]
        at org.hibernate.boot.internal.SessionFactoryBuilderImpl.build(SessionFactoryBuilderImpl.java:493) ~[hibernate-core-5.2.3.Final.jar:5.2.3.Final]
        at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.build(EntityManagerFactoryBuilderImpl.java:878) ~[hibernate-core-5.2.3.Final.jar:5.2.3.Final]
        ... 29 common frames omitted

[WARNING]
java.lang.reflect.InvocationTargetException
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
        at java.lang.reflect.Method.invoke(Method.java:483)
        at org.springframework.boot.maven.AbstractRunMojo$LaunchRunner.run(AbstractRunMojo.java:527)
        at java.lang.Thread.run(Thread.java:745)
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'entityManagerFactory' defined in class path resource [org/springframework/boot/autoc
onfigure/orm/jpa/HibernateJpaAutoConfiguration.class]: Invocation of init method failed; nested exception is javax.persistence.PersistenceException: [PersistenceUnit: default] Unable
to build Hibernate SessionFactory
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1628)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:555)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:483)
        at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:306)
        at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
        at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:302)
        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197)
        at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1080)
        at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:857)
        at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:543)
        at org.springframework.boot.context.embedded.EmbeddedWebApplicationContext.refresh(EmbeddedWebApplicationContext.java:122)
        at org.springframework.boot.SpringApplication.refresh(SpringApplication.java:693)
        at org.springframework.boot.SpringApplication.refreshContext(SpringApplication.java:360)
        at org.springframework.boot.SpringApplication.run(SpringApplication.java:303)
        at org.springframework.boot.SpringApplication.run(SpringApplication.java:1118)
        at org.springframework.boot.SpringApplication.run(SpringApplication.java:1107)
        at com.amplitude.clinirecord.ClinirecordApplication.main(ClinirecordApplication.java:12)
        ... 6 more
Caused by: javax.persistence.PersistenceException: [PersistenceUnit: default] Unable to build Hibernate SessionFactory
        at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.persistenceException(EntityManagerFactoryBuilderImpl.java:951)
        at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.build(EntityManagerFactoryBuilderImpl.java:881)
        at org.springframework.orm.jpa.vendor.SpringHibernateJpaPersistenceProvider.createContainerEntityManagerFactory(SpringHibernateJpaPersistenceProvider.java:60)
        at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.createNativeEntityManagerFactory(LocalContainerEntityManagerFactoryBean.java:360)
        at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.buildNativeEntityManagerFactory(AbstractEntityManagerFactoryBean.java:382)
        at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.afterPropertiesSet(AbstractEntityManagerFactoryBean.java:371)
        at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.afterPropertiesSet(LocalContainerEntityManagerFactoryBean.java:336)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1687)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1624)
        ... 22 more
Caused by: org.hibernate.tool.schema.spi.SchemaManagementException: Attempt to resolve foreign key metadata from JDBC metadata failed to find column mappings for foreign key named [FK
nn0a9ercafmerc1e2bs3ut8mh]
        at org.hibernate.tool.schema.extract.internal.InformationExtractorJdbcDatabaseMetaDataImpl$ForeignKeyBuilderImpl.build(InformationExtractorJdbcDatabaseMetaDataImpl.java:885)
        at org.hibernate.tool.schema.extract.internal.InformationExtractorJdbcDatabaseMetaDataImpl$ForeignKeyBuilderImpl.build(InformationExtractorJdbcDatabaseMetaDataImpl.java:866)
        at org.hibernate.tool.schema.extract.internal.InformationExtractorJdbcDatabaseMetaDataImpl.getForeignKeys(InformationExtractorJdbcDatabaseMetaDataImpl.java:849)
        at org.hibernate.tool.schema.extract.internal.TableInformationImpl.foreignKeys(TableInformationImpl.java:97)
        at org.hibernate.tool.schema.extract.internal.TableInformationImpl.getForeignKey(TableInformationImpl.java:108)
        at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.findMatchingForeignKey(AbstractSchemaMigrator.java:446)
        at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.applyForeignKeys(AbstractSchemaMigrator.java:419)
        at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.performMigration(AbstractSchemaMigrator.java:245)
        at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.doMigration(AbstractSchemaMigrator.java:110)
        at org.hibernate.tool.schema.spi.SchemaManagementToolCoordinator.performDatabaseAction(SchemaManagementToolCoordinator.java:177)
        at org.hibernate.tool.schema.spi.SchemaManagementToolCoordinator.process(SchemaManagementToolCoordinator.java:66)
        at org.hibernate.internal.SessionFactoryImpl.<init>(SessionFactoryImpl.java:309)
        at org.hibernate.boot.internal.SessionFactoryBuilderImpl.build(SessionFactoryBuilderImpl.java:493)
        at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.build(EntityManagerFactoryBuilderImpl.java:878)
        ... 29 more
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 9.247 s
[INFO] Finished at: 2017-12-14T12:12:01+01:00
[INFO] Final Memory: 41M/190M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.springframework.boot:spring-boot-maven-plugin:1.5.9.RELEASE:run (default-cli) on project clinirecord: An exception occurred while running. null: Inv
ocationTargetException: Error creating bean with name 'entityManagerFactory' defined in class path resource [org/springframework/boot/autoconfigure/orm/jpa/HibernateJpaAutoConfigurati
on.class]: Invocation of init method failed; nested exception is javax.persistence.PersistenceException: [PersistenceUnit: default] Unable to build Hibernate SessionFactory: Attempt t
o resolve foreign key metadata from JDBC metadata failed to find column mappings for foreign key named [FKnn0a9ercafmerc1e2bs3ut8mh] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
For me, "HHH000262: Table not found: preference" means that Hibernate tried to retrieve table preference (lower case instead "Preference")
Constraint key FKnn0a9ercafmerc1e2bs3ut8mh is in my table User which map to preference table. Hibernate tried to retrieve Preference table trought the referenced table column in the foreign key information.