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Until there is an official fix, looks like you can work around the issue by projecting on the revision number first, then fetching the revision entities manually. Something like this:
@SuppressWarnings("unchecked")
List<Number> revisionNumbers = auditReader.createQuery().forRevisionsOfEntity(YourEntity.class, true, true)
// add your criteria here
.addProjection(AuditEntity.revisionNumber().distinct())
.getResultList();
Map<Number, YourRevision> revisions = auditReader.findRevisions(YourRevision.class, new HashSet<Number>(revisionNumbers));
Interestingly, it also works with selectEntitiesOnly=false, but it generates a useless join into the query in that case.