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I was unable to make the custom ErrorHandler solution work so I ended up copying and pasting the org.hibernate.search.bridge.builtin.TikaBridge into my codebase and modifying it to log parse errors but keep moving.
I ended up using the following annotations to bring it all together.
@Field
@FieldBridge(impl=com.my.project.CustomTikaBridge.class)
private byte[] bytes;