Mac OS x Mountain Lion, Jdk 1.6. Where it seems to be going wrong is AnnotationMetadataProvider => checkForIndexedEmbedded. In the cases where I don't get the embedded element parsed, there are no includePaths specified and I see that isMaxLevelReached always returns true and the updatedPathsContext is always empty, also returning false. This seems to he a heavily refactored area, so. If you want me to look at anything in my environment you'll have to ask specific questions.
Some aspects that may or may not be relevant * The root entities in question are used in various other index hierarchies root entities as @IndexedEmbedded. Perhaps the maxLeven algorithm is faulty?
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