Was able to get it working by removing certain jars from the .war files :
(Placing extracts from build.xml used)
http://blog.athico.com/2011/05/guvnor-wars-per-application-server.html
<target name="install.jBPM-gwt-console.into.jboss1" depends="download.h2,download.birt,download.jBPM.gwt-console">
<!-- gwt-console -->
<mkdir dir="${install.home}/target"/>
<unzip src="${install.home}/lib/jbpm-${jBPM.version}-gwt-console.zip" dest="${install.home}/target" />
<mkdir dir="${install.home}/target/jbpm-gwt-console-server-war"/>
<unzip src="${install.home}/target/jbpm-gwt-console-server-${jBPM.version}.war"
dest="${install.home}/target/jbpm-gwt-console-server-war"/>
<copy file="${install.home}/db/hibernate.cfg.xml"
tofile="${install.home}/target/jbpm-gwt-console-server-war/WEB-INF/classes/hibernate.cfg.xml"
overwrite="true" />
<copy file="${install.home}/db/persistence.xml"
tofile="${install.home}/target/jbpm-gwt-console-server-war/WEB-INF/classes/META-INF/persistence.xml"
overwrite="true" />
<!-- Fix for conflicting javassist jar -->
<echo message="Deleting conflicting jars from jbpm-gwt-console-server-war"/>
<delete file="${install.home}/target/jbpm-gwt-console-server-war/WEB-INF/lib/javassist-3.6.0.GA.jar"/>
<delete file="${install.home}/target/jbpm-gwt-console-server-war/WEB-INF/lib/jaxrs-api-1.0.2.GA.jar"/>
<delete file="${install.home}/target/jbpm-gwt-console-server-war/WEB-INF/lib/el-api.jar"/>
<delete file="${install.home}/target/jbpm-gwt-console-server-war/WEB-INF/lib/slf4j-api-1.6.0.jar"/>
<delete file="${install.home}/target/jbpm-gwt-console-server-war/WEB-INF/lib/slf-log4j12-1.6.0.jar"/>
<delete file="${install.home}/target/jbpm-gwt-console-server-war/WEB-INF/lib/slf4j-api-1.5.2.jar"/>
<delete file="${install.home}/target/jbpm-gwt-console-server-war/WEB-INF/lib/slf4j-log4j12-1.5.2.jar"/>
<delete file="${install.home}/target/jbpm-gwt-console-server-war/WEB-INF/lib/slf4j-simple-1.5.2.jar"/>
<!-- <delete file="${install.home}/target/jbpm-gwt-console-server-war/WEB-INF/lib/el-impl-1.0.jar"/> -->
<delete file="${install.home}/target/jbpm-gwt-console-server-war/WEB-INF/lib/javax.jsf_1.2.0.0.jar"/>
<delete file="${install.home}/target/jbpm-gwt-console-server-war/WEB-INF/lib/glassfish.jsf_1.2.3.2.jar"/>
<delete file="${install.home}/target/jbpm-gwt-console-server-war/WEB-INF/lib/glassfish.jstl_1.2.0.1.jar"/>
<!-- Other configuration like work item handlers -->
<copy todir="${install.home}/target/jbpm-gwt-console-server-war/WEB-INF/classes" overwrite="true">
<fileset dir="${install.home}/conf"/>
</copy>
<zip basedir="${install.home}/target/jbpm-gwt-console-server-war"
destfile="${install.home}/target/jbpm-gwt-console-server-${jBPM.version}.war"/>
<copy file="${install.home}/target/jbpm-gwt-console-server-${jBPM.version}.war"
tofile="${jboss.server.deploy.dir}/jbpm-gwt-console-server.war"
overwrite="true" />
<copy file="${install.home}/target/jbpm-gwt-console-${jBPM.version}.war"
tofile="${jboss.server.deploy.dir}/jbpm-gwt-console.war"
overwrite="true" />
<delete dir="${install.home}/target"/>
<!-- db configuration -->
<copy file="${install.home}/db/testDS1-ds.xml"
tofile="${jboss.server.deploy.dir}/testDS1-ds.xml"
overwrite="true" />
<copy todir="${jboss.server.lib.dir}" overwrite="true">
<fileset dir="${install.home}/db/driver"/>
</copy>
<!-- authentication configuration -->
<copy file="${install.home}/auth/users.properties"
tofile="${jboss.server.conf.dir}/users.properties"
overwrite="true" />
<copy file="${install.home}/auth/roles.properties"
tofile="${jboss.server.conf.dir}/roles.properties"
overwrite="true" />
<!-- reporting -->
<antcall target="install.reporting.into.jboss" />
</target>
2)
<target name="install.guvnor.into.jboss.other1">
<mkdir dir="${install.home}/target/drools-guvnor"/>
<unzip src="${install.home}/lib/guvnor-5.2.0.Final-jboss-as-6.0.war" dest="${install.home}/target/drools-guvnor" />
<echo message="Removing the unrequired jars from drools-guvnor.war"/>
<delete>
<fileset dir="${install.home}/target/drools-guvnor/WEB-INF/lib" includes="xml-apis-*.jar"/>
<fileset dir="${install.home}/target/drools-guvnor/WEB-INF/lib" includes="jta-*.jar"/>
<fileset dir="${install.home}/target/drools-guvnor/WEB-INF/lib" includes="slf4j-api-1.6.0.jar"/>
<fileset dir="${install.home}/target/drools-guvnor/WEB-INF/lib" includes="slf4j-log4j12-1.6.0.jar"/>
<!-- <fileset dir="${install.home}/target/drools-guvnor/WEB-INF/lib" includes="jsf-api-*.jar"/> -->
<fileset dir="${install.home}/target/drools-guvnor/WEB-INF/lib" includes="javassist-*.jar"/>
<fileset dir="${install.home}/target/drools-guvnor/WEB-INF/classes/org/drools/guvnor/server/jaxrs" includes="GuvnorApplication.class"/>
</delete>
<zip basedir="${install.home}/target/drools-guvnor"
destfile="${install.home}/target/drools-guvnor.war"/>
<copy file="${install.home}/target/drools-guvnor.war"
tofile="${jboss.server.deploy.dir}/drools-guvnor.war"
overwrite="true" />
<delete dir="${install.home}/target"/>
</target>