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bom-check checks the resolution based on ~/.m2/settings.xml.
This is the Shrinkwrap resolver command that is used: Maven.resolver().loadPomFromFile(project.getFile()).resolve(gav).withMavenCentralRepo(true).withClassPathResolution(false).withTransitivity().asFile();
Reference: https://github.com/jboss-developer/maven-qstools-plugin/blob/master/src/main/java/org/jboss/maven/plugins/qstools/BomCheckerMojo.java#L65