[jboss-jira] [JBoss JIRA] Assigned: (JBRULES-2414) Another test case of bugs with nested prefix-and and prefix-or conditional expressions

[Edson Tirelli (JIRA)]

     [ https://jira.jboss.org/jira/browse/JBRULES-2414?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]

Edson Tirelli reassigned JBRULES-2414:
--------------------------------------

    Assignee: Edson Tirelli  (was: Mark Proctor)


> Another test case of bugs with nested prefix-and and prefix-or conditional expressions
> --------------------------------------------------------------------------------------
>
>                 Key: JBRULES-2414
>                 URL: https://jira.jboss.org/jira/browse/JBRULES-2414
>             Project: Drools
>          Issue Type: Sub-task
>      Security Level: Public(Everyone can see) 
>          Components: drools-compiler (expert)
>    Affects Versions: 5.0.1.FINAL
>         Environment: Drools 5.0.1 on windows, jdk1.6.0_13
>            Reporter: Nelson Axelrod
>            Assignee: Edson Tirelli
>
> Edson recommended submission of this ticket to JIRA -- rules-users Digest, Vol 38, Issue 58
> rule "test lysine decarboxylase"
> when
>       (or
>             (and
>                   blast_hit : BlastHit( hitId=='GB|AAQ16631.1')
>                   gene1 : Feature( featureId == blast_hit.queryId )
>             )
>             (or
>                   (and
>                         blast_hit : BlastHit( hitId=='GB|AAQ16631.1' )
>                         gene1 : Feature( featureId == blast_hit.queryId )
>                   )
>                   (and
>                         hmm_hit1 : HmmHit( hitId=='TIGR00905' )
>                         gene1 : Feature( featureId == hmm_hit1.queryId )
>                         gene2 : Feature( eval(gene2.isWithin(gene1, 500)) )
>                   )
>             )
>       )
> then      
>       Annotation a = new Annotation("lysine decarboxylase CadA");
>       gene1.addAnnotation(a);
> end
> Exception in thread "main"
> org.jcvi.annotation.rulesengine.RulesResourceException: Could not parse
> resource in [FileResource
> file='C:\development\workspace\RulesBasedAnnotation\tests\org\jcvi\annot
> ation\rules\testNestedOr.drl'] with errors
> [14,4]: [ERR 101] Line 14:4 no viable alternative at input 'blast_hit'
> in rule "2645|lysine decarboxylase CadA" in pattern or[22,2]: [ERR 102]
> Line 22:2 mismatched input ')' expecting 'then' in rule "2645|lysine
> decarboxylase CadA"
> 	at
> org.jcvi.annotation.rulesengine.RulesEngine.addResource(RulesEngine.java
> :103)
> 	at
> org.jcvi.annotation.rulesengine.RulesEngine.addResource(RulesEngine.java
> :83)
> 	at org.jcvi.annotation.Aruba.addRuleByFile(Aruba.java:68)
> 	at org.jcvi.annotation.Aruba.main(Aruba.java:253)

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