]
Mircea Markus updated ISPN-3375:
--------------------------------
Fix Version/s: 6.0.0.CR1
6.0.0.Final
Map/Reduce jobs with small value sizes fail because of timeouts
putting intermediate keys into the cache
--------------------------------------------------------------------------------------------------------
Key: ISPN-3375
URL:
https://issues.jboss.org/browse/ISPN-3375
Project: Infinispan
Issue Type: Bug
Components: Distributed Execution and Map/Reduce
Affects Versions: 5.3.0.Final
Reporter: Alan Field
Assignee: Mircea Markus
Fix For: 6.0.0.CR1, 6.0.0.Final
Attachments: stdout.zip
The following exception occurs on the primary node running a Map/Reduce job with 1KB
values:
{noformat}
12:57:32,755 ERROR [org.radargun.stages.MapReduceStage] (pool-1-thread-1)
executeMapReduceTask() returned an exception
org.infinispan.CacheException: java.util.concurrent.ExecutionException:
org.infinispan.remoting.RemoteException: ISPN000217: Received exception from
edg-perf03-15313, see cause for remote stack trace
at org.infinispan.distexec.mapreduce.MapReduceTask.execute(MapReduceTask.java:369)
at
org.radargun.cachewrappers.InfinispanMapReduceWrapper.executeMapReduceTask(InfinispanMapReduceWrapper.java:113)
at org.radargun.stages.MapReduceStage.executeMapReduceTask(MapReduceStage.java:207)
at org.radargun.stages.MapReduceStage.executeOnSlave(MapReduceStage.java:149)
at org.radargun.Slave$2.run(Slave.java:103)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334)
at java.util.concurrent.FutureTask.run(FutureTask.java:166)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:724)
Caused by: java.util.concurrent.ExecutionException:
org.infinispan.remoting.RemoteException: ISPN000217: Received exception from
edg-perf03-15313, see cause for remote stack trace
at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:252)
at java.util.concurrent.FutureTask.get(FutureTask.java:111)
at org.infinispan.distexec.mapreduce.MapReduceTask$TaskPart.get(MapReduceTask.java:867)
at
org.infinispan.distexec.mapreduce.MapReduceTask.executeMapPhase(MapReduceTask.java:461)
at org.infinispan.distexec.mapreduce.MapReduceTask.execute(MapReduceTask.java:363)
... 10 more
Caused by: org.infinispan.remoting.RemoteException: ISPN000217: Received exception from
edg-perf03-15313, see cause for remote stack trace
at
org.infinispan.remoting.transport.AbstractTransport.checkResponse(AbstractTransport.java:70)
at
org.infinispan.remoting.transport.jgroups.CommandAwareRpcDispatcher.processSingleCall(CommandAwareRpcDispatcher.java:384)
at
org.infinispan.remoting.transport.jgroups.CommandAwareRpcDispatcher.invokeRemoteCommand(CommandAwareRpcDispatcher.java:189)
at
org.infinispan.remoting.transport.jgroups.JGroupsTransport.invokeRemotely(JGroupsTransport.java:531)
at org.infinispan.remoting.rpc.RpcManagerImpl.invokeRemotely(RpcManagerImpl.java:303)
at org.infinispan.remoting.rpc.RpcManagerImpl$2.call(RpcManagerImpl.java:340)
... 5 more
Caused by: org.infinispan.CacheException: org.infinispan.CacheException: Could not move
intermediate keys/values for M/R task edc7a51c-d25a-4650-b39a-8d8a87d7cd61
at
org.infinispan.distexec.mapreduce.MapReduceManagerImpl.mapAndCombineForDistributedReduction(MapReduceManagerImpl.java:114)
at org.infinispan.commands.read.MapCombineCommand.perform(MapCombineCommand.java:93)
at
org.infinispan.remoting.InboundInvocationHandlerImpl.handleInternal(InboundInvocationHandlerImpl.java:122)
at
org.infinispan.remoting.InboundInvocationHandlerImpl.access$000(InboundInvocationHandlerImpl.java:68)
at
org.infinispan.remoting.InboundInvocationHandlerImpl$2.run(InboundInvocationHandlerImpl.java:194)
... 3 more
Caused by: org.infinispan.CacheException: Could not move intermediate keys/values for M/R
task edc7a51c-d25a-4650-b39a-8d8a87d7cd61
at
org.infinispan.distexec.mapreduce.MapReduceManagerImpl.combine(MapReduceManagerImpl.java:331)
at
org.infinispan.distexec.mapreduce.MapReduceManagerImpl.mapAndCombineForDistributedReduction(MapReduceManagerImpl.java:112)
... 7 more
Caused by: org.infinispan.util.concurrent.TimeoutException: Node edg-perf02-56077 timed
out
at
org.infinispan.remoting.transport.jgroups.CommandAwareRpcDispatcher.invokeRemoteCommand(CommandAwareRpcDispatcher.java:196)
at
org.infinispan.remoting.transport.jgroups.JGroupsTransport.invokeRemotely(JGroupsTransport.java:531)
at org.infinispan.remoting.rpc.RpcManagerImpl.invokeRemotely(RpcManagerImpl.java:303)
at
org.infinispan.interceptors.distribution.BaseDistributionInterceptor.handleNonTxWriteCommand(BaseDistributionInterceptor.java:151)
at
org.infinispan.interceptors.distribution.NonTxDistributionInterceptor.visitPutKeyValueCommand(NonTxDistributionInterceptor.java:91)
at
org.infinispan.commands.write.PutKeyValueCommand.acceptVisitor(PutKeyValueCommand.java:83)
at
org.infinispan.interceptors.base.CommandInterceptor.invokeNextInterceptor(CommandInterceptor.java:120)
at
org.infinispan.interceptors.EntryWrappingInterceptor.invokeNextAndApplyChanges(EntryWrappingInterceptor.java:290)
at
org.infinispan.interceptors.EntryWrappingInterceptor.visitPutKeyValueCommand(EntryWrappingInterceptor.java:157)
at
org.infinispan.commands.write.PutKeyValueCommand.acceptVisitor(PutKeyValueCommand.java:83)
at
org.infinispan.interceptors.base.CommandInterceptor.invokeNextInterceptor(CommandInterceptor.java:120)
at
org.infinispan.interceptors.locking.AbstractLockingInterceptor.visitPutKeyValueCommand(AbstractLockingInterceptor.java:70)
at
org.infinispan.commands.write.PutKeyValueCommand.acceptVisitor(PutKeyValueCommand.java:83)
at
org.infinispan.interceptors.base.CommandInterceptor.invokeNextInterceptor(CommandInterceptor.java:120)
at
org.infinispan.interceptors.base.CommandInterceptor.handleDefault(CommandInterceptor.java:134)
at
org.infinispan.commands.AbstractVisitor.visitPutKeyValueCommand(AbstractVisitor.java:54)
at
org.infinispan.commands.write.PutKeyValueCommand.acceptVisitor(PutKeyValueCommand.java:83)
at
org.infinispan.interceptors.base.CommandInterceptor.invokeNextInterceptor(CommandInterceptor.java:120)
at
org.infinispan.interceptors.base.CommandInterceptor.handleDefault(CommandInterceptor.java:134)
at
org.infinispan.commands.AbstractVisitor.visitPutKeyValueCommand(AbstractVisitor.java:54)
at
org.infinispan.commands.write.PutKeyValueCommand.acceptVisitor(PutKeyValueCommand.java:83)
at
org.infinispan.interceptors.base.CommandInterceptor.invokeNextInterceptor(CommandInterceptor.java:120)
at
org.infinispan.statetransfer.StateTransferInterceptor.handleTopologyAffectedCommand(StateTransferInterceptor.java:216)
at
org.infinispan.statetransfer.StateTransferInterceptor.handleWriteCommand(StateTransferInterceptor.java:194)
at
org.infinispan.statetransfer.StateTransferInterceptor.visitPutKeyValueCommand(StateTransferInterceptor.java:136)
at
org.infinispan.commands.write.PutKeyValueCommand.acceptVisitor(PutKeyValueCommand.java:83)
at
org.infinispan.interceptors.base.CommandInterceptor.invokeNextInterceptor(CommandInterceptor.java:120)
at
org.infinispan.interceptors.CacheMgmtInterceptor.visitPutKeyValueCommand(CacheMgmtInterceptor.java:160)
at
org.infinispan.commands.write.PutKeyValueCommand.acceptVisitor(PutKeyValueCommand.java:83)
at
org.infinispan.interceptors.base.CommandInterceptor.invokeNextInterceptor(CommandInterceptor.java:120)
at
org.infinispan.interceptors.InvocationContextInterceptor.handleAll(InvocationContextInterceptor.java:128)
at
org.infinispan.interceptors.InvocationContextInterceptor.handleDefault(InvocationContextInterceptor.java:92)
at
org.infinispan.commands.AbstractVisitor.visitPutKeyValueCommand(AbstractVisitor.java:54)
at
org.infinispan.commands.write.PutKeyValueCommand.acceptVisitor(PutKeyValueCommand.java:83)
at org.infinispan.interceptors.InterceptorChain.invoke(InterceptorChain.java:343)
at org.infinispan.CacheImpl.executeCommandAndCommitIfNeeded(CacheImpl.java:1337)
at org.infinispan.CacheImpl.putInternal(CacheImpl.java:898)
at org.infinispan.CacheImpl.put(CacheImpl.java:890)
at org.infinispan.CacheImpl.put(CacheImpl.java:1390)
at org.infinispan.CacheImpl.put(CacheImpl.java:229)
at
org.infinispan.distexec.mapreduce.MapReduceManagerImpl.combine(MapReduceManagerImpl.java:326)
... 8 more
Caused by: org.jgroups.TimeoutException: timeout sending message to edg-perf02-56077
at org.jgroups.blocks.MessageDispatcher.sendMessage(MessageDispatcher.java:419)
at
org.infinispan.remoting.transport.jgroups.CommandAwareRpcDispatcher.processSingleCall(CommandAwareRpcDispatcher.java:375)
at
org.infinispan.remoting.transport.jgroups.CommandAwareRpcDispatcher.invokeRemoteCommand(CommandAwareRpcDispatcher.java:189)
... 48 more
{noformat}
And this exception is occurring on the other node in the cluster:
{noformat}
12:57:32,484 ERROR [org.infinispan.interceptors.InvocationContextInterceptor]
(remote-thread-0) ISPN000136: Execution error
org.infinispan.util.concurrent.TimeoutException: Node edg-perf02-56077 timed out
at
org.infinispan.remoting.transport.jgroups.CommandAwareRpcDispatcher.invokeRemoteCommand(CommandAwareRpcDispatcher.java:196)
at
org.infinispan.remoting.transport.jgroups.JGroupsTransport.invokeRemotely(JGroupsTransport.java:531)
at org.infinispan.remoting.rpc.RpcManagerImpl.invokeRemotely(RpcManagerImpl.java:303)
at
org.infinispan.interceptors.distribution.BaseDistributionInterceptor.handleNonTxWriteCommand(BaseDistributionInterceptor.java:151)
at
org.infinispan.interceptors.distribution.NonTxDistributionInterceptor.visitPutKeyValueCommand(NonTxDistributionInterceptor.java:91)
at
org.infinispan.commands.write.PutKeyValueCommand.acceptVisitor(PutKeyValueCommand.java:83)
at
org.infinispan.interceptors.base.CommandInterceptor.invokeNextInterceptor(CommandInterceptor.java:120)
at
org.infinispan.interceptors.EntryWrappingInterceptor.invokeNextAndApplyChanges(EntryWrappingInterceptor.java:290)
at
org.infinispan.interceptors.EntryWrappingInterceptor.visitPutKeyValueCommand(EntryWrappingInterceptor.java:157)
at
org.infinispan.commands.write.PutKeyValueCommand.acceptVisitor(PutKeyValueCommand.java:83)
at
org.infinispan.interceptors.base.CommandInterceptor.invokeNextInterceptor(CommandInterceptor.java:120)
at
org.infinispan.interceptors.locking.AbstractLockingInterceptor.visitPutKeyValueCommand(AbstractLockingInterceptor.java:70)
at
org.infinispan.commands.write.PutKeyValueCommand.acceptVisitor(PutKeyValueCommand.java:83)
at
org.infinispan.interceptors.base.CommandInterceptor.invokeNextInterceptor(CommandInterceptor.java:120)
at
org.infinispan.interceptors.base.CommandInterceptor.handleDefault(CommandInterceptor.java:134)
at
org.infinispan.commands.AbstractVisitor.visitPutKeyValueCommand(AbstractVisitor.java:54)
at
org.infinispan.commands.write.PutKeyValueCommand.acceptVisitor(PutKeyValueCommand.java:83)
at
org.infinispan.interceptors.base.CommandInterceptor.invokeNextInterceptor(CommandInterceptor.java:120)
at
org.infinispan.interceptors.base.CommandInterceptor.handleDefault(CommandInterceptor.java:134)
at
org.infinispan.commands.AbstractVisitor.visitPutKeyValueCommand(AbstractVisitor.java:54)
at
org.infinispan.commands.write.PutKeyValueCommand.acceptVisitor(PutKeyValueCommand.java:83)
at
org.infinispan.interceptors.base.CommandInterceptor.invokeNextInterceptor(CommandInterceptor.java:120)
at
org.infinispan.statetransfer.StateTransferInterceptor.handleTopologyAffectedCommand(StateTransferInterceptor.java:216)
at
org.infinispan.statetransfer.StateTransferInterceptor.handleWriteCommand(StateTransferInterceptor.java:194)
at
org.infinispan.statetransfer.StateTransferInterceptor.visitPutKeyValueCommand(StateTransferInterceptor.java:136)
at
org.infinispan.commands.write.PutKeyValueCommand.acceptVisitor(PutKeyValueCommand.java:83)
at
org.infinispan.interceptors.base.CommandInterceptor.invokeNextInterceptor(CommandInterceptor.java:120)
at
org.infinispan.interceptors.CacheMgmtInterceptor.visitPutKeyValueCommand(CacheMgmtInterceptor.java:160)
at
org.infinispan.commands.write.PutKeyValueCommand.acceptVisitor(PutKeyValueCommand.java:83)
at
org.infinispan.interceptors.base.CommandInterceptor.invokeNextInterceptor(CommandInterceptor.java:120)
at
org.infinispan.interceptors.InvocationContextInterceptor.handleAll(InvocationContextInterceptor.java:128)
at
org.infinispan.interceptors.InvocationContextInterceptor.handleDefault(InvocationContextInterceptor.java:92)
at
org.infinispan.commands.AbstractVisitor.visitPutKeyValueCommand(AbstractVisitor.java:54)
at
org.infinispan.commands.write.PutKeyValueCommand.acceptVisitor(PutKeyValueCommand.java:83)
at org.infinispan.interceptors.InterceptorChain.invoke(InterceptorChain.java:343)
at org.infinispan.CacheImpl.executeCommandAndCommitIfNeeded(CacheImpl.java:1337)
at org.infinispan.CacheImpl.putInternal(CacheImpl.java:898)
at org.infinispan.CacheImpl.put(CacheImpl.java:890)
at org.infinispan.CacheImpl.put(CacheImpl.java:1390)
at org.infinispan.CacheImpl.put(CacheImpl.java:229)
at
org.infinispan.distexec.mapreduce.MapReduceManagerImpl.combine(MapReduceManagerImpl.java:326)
at
org.infinispan.distexec.mapreduce.MapReduceManagerImpl.mapAndCombineForDistributedReduction(MapReduceManagerImpl.java:112)
at org.infinispan.commands.read.MapCombineCommand.perform(MapCombineCommand.java:93)
at
org.infinispan.remoting.InboundInvocationHandlerImpl.handleInternal(InboundInvocationHandlerImpl.java:122)
at
org.infinispan.remoting.InboundInvocationHandlerImpl.access$000(InboundInvocationHandlerImpl.java:68)
at
org.infinispan.remoting.InboundInvocationHandlerImpl$2.run(InboundInvocationHandlerImpl.java:194)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:724)
Caused by: org.jgroups.TimeoutException: timeout sending message to edg-perf02-56077
at org.jgroups.blocks.MessageDispatcher.sendMessage(MessageDispatcher.java:419)
at
org.infinispan.remoting.transport.jgroups.CommandAwareRpcDispatcher.processSingleCall(CommandAwareRpcDispatcher.java:375)
at
org.infinispan.remoting.transport.jgroups.CommandAwareRpcDispatcher.invokeRemoteCommand(CommandAwareRpcDispatcher.java:189)
... 48 more
12:57:32,494 ERROR [org.infinispan.remoting.InboundInvocationHandlerImpl]
(remote-thread-0) Exception executing command
org.infinispan.CacheException: org.infinispan.CacheException: Could not move intermediate
keys/values for M/R task edc7a51c-d25a-4650-b39a-8d8a87d7cd61
at
org.infinispan.distexec.mapreduce.MapReduceManagerImpl.mapAndCombineForDistributedReduction(MapReduceManagerImpl.java:114)
at org.infinispan.commands.read.MapCombineCommand.perform(MapCombineCommand.java:93)
at
org.infinispan.remoting.InboundInvocationHandlerImpl.handleInternal(InboundInvocationHandlerImpl.java:122)
at
org.infinispan.remoting.InboundInvocationHandlerImpl.access$000(InboundInvocationHandlerImpl.java:68)
at
org.infinispan.remoting.InboundInvocationHandlerImpl$2.run(InboundInvocationHandlerImpl.java:194)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:724)
Caused by: org.infinispan.CacheException: Could not move intermediate keys/values for M/R
task edc7a51c-d25a-4650-b39a-8d8a87d7cd61
at
org.infinispan.distexec.mapreduce.MapReduceManagerImpl.combine(MapReduceManagerImpl.java:331)
at
org.infinispan.distexec.mapreduce.MapReduceManagerImpl.mapAndCombineForDistributedReduction(MapReduceManagerImpl.java:112)
... 7 more
Caused by: org.infinispan.util.concurrent.TimeoutException: Node edg-perf02-56077 timed
out
at
org.infinispan.remoting.transport.jgroups.CommandAwareRpcDispatcher.invokeRemoteCommand(CommandAwareRpcDispatcher.java:196)
at
org.infinispan.remoting.transport.jgroups.JGroupsTransport.invokeRemotely(JGroupsTransport.java:531)
at org.infinispan.remoting.rpc.RpcManagerImpl.invokeRemotely(RpcManagerImpl.java:303)
at
org.infinispan.interceptors.distribution.BaseDistributionInterceptor.handleNonTxWriteCommand(BaseDistributionInterceptor.java:151)
at
org.infinispan.interceptors.distribution.NonTxDistributionInterceptor.visitPutKeyValueCommand(NonTxDistributionInterceptor.java:91)
at
org.infinispan.commands.write.PutKeyValueCommand.acceptVisitor(PutKeyValueCommand.java:83)
at
org.infinispan.interceptors.base.CommandInterceptor.invokeNextInterceptor(CommandInterceptor.java:120)
at
org.infinispan.interceptors.EntryWrappingInterceptor.invokeNextAndApplyChanges(EntryWrappingInterceptor.java:290)
at
org.infinispan.interceptors.EntryWrappingInterceptor.visitPutKeyValueCommand(EntryWrappingInterceptor.java:157)
at
org.infinispan.commands.write.PutKeyValueCommand.acceptVisitor(PutKeyValueCommand.java:83)
at
org.infinispan.interceptors.base.CommandInterceptor.invokeNextInterceptor(CommandInterceptor.java:120)
at
org.infinispan.interceptors.locking.AbstractLockingInterceptor.visitPutKeyValueCommand(AbstractLockingInterceptor.java:70)
at
org.infinispan.commands.write.PutKeyValueCommand.acceptVisitor(PutKeyValueCommand.java:83)
at
org.infinispan.interceptors.base.CommandInterceptor.invokeNextInterceptor(CommandInterceptor.java:120)
at
org.infinispan.interceptors.base.CommandInterceptor.handleDefault(CommandInterceptor.java:134)
at
org.infinispan.commands.AbstractVisitor.visitPutKeyValueCommand(AbstractVisitor.java:54)
at
org.infinispan.commands.write.PutKeyValueCommand.acceptVisitor(PutKeyValueCommand.java:83)
at
org.infinispan.interceptors.base.CommandInterceptor.invokeNextInterceptor(CommandInterceptor.java:120)
at
org.infinispan.interceptors.base.CommandInterceptor.handleDefault(CommandInterceptor.java:134)
at
org.infinispan.commands.AbstractVisitor.visitPutKeyValueCommand(AbstractVisitor.java:54)
at
org.infinispan.commands.write.PutKeyValueCommand.acceptVisitor(PutKeyValueCommand.java:83)
at
org.infinispan.interceptors.base.CommandInterceptor.invokeNextInterceptor(CommandInterceptor.java:120)
at
org.infinispan.statetransfer.StateTransferInterceptor.handleTopologyAffectedCommand(StateTransferInterceptor.java:216)
at
org.infinispan.statetransfer.StateTransferInterceptor.handleWriteCommand(StateTransferInterceptor.java:194)
at
org.infinispan.statetransfer.StateTransferInterceptor.visitPutKeyValueCommand(StateTransferInterceptor.java:136)
at
org.infinispan.commands.write.PutKeyValueCommand.acceptVisitor(PutKeyValueCommand.java:83)
at
org.infinispan.interceptors.base.CommandInterceptor.invokeNextInterceptor(CommandInterceptor.java:120)
at
org.infinispan.interceptors.CacheMgmtInterceptor.visitPutKeyValueCommand(CacheMgmtInterceptor.java:160)
at
org.infinispan.commands.write.PutKeyValueCommand.acceptVisitor(PutKeyValueCommand.java:83)
at
org.infinispan.interceptors.base.CommandInterceptor.invokeNextInterceptor(CommandInterceptor.java:120)
at
org.infinispan.interceptors.InvocationContextInterceptor.handleAll(InvocationContextInterceptor.java:128)
at
org.infinispan.interceptors.InvocationContextInterceptor.handleDefault(InvocationContextInterceptor.java:92)
at
org.infinispan.commands.AbstractVisitor.visitPutKeyValueCommand(AbstractVisitor.java:54)
at
org.infinispan.commands.write.PutKeyValueCommand.acceptVisitor(PutKeyValueCommand.java:83)
at org.infinispan.interceptors.InterceptorChain.invoke(InterceptorChain.java:343)
at org.infinispan.CacheImpl.executeCommandAndCommitIfNeeded(CacheImpl.java:1337)
at org.infinispan.CacheImpl.putInternal(CacheImpl.java:898)
at org.infinispan.CacheImpl.put(CacheImpl.java:890)
at org.infinispan.CacheImpl.put(CacheImpl.java:1390)
at org.infinispan.CacheImpl.put(CacheImpl.java:229)
at
org.infinispan.distexec.mapreduce.MapReduceManagerImpl.combine(MapReduceManagerImpl.java:326)
... 8 more
Caused by: org.jgroups.TimeoutException: timeout sending message to edg-perf02-56077
at org.jgroups.blocks.MessageDispatcher.sendMessage(MessageDispatcher.java:419)
at
org.infinispan.remoting.transport.jgroups.CommandAwareRpcDispatcher.processSingleCall(CommandAwareRpcDispatcher.java:375)
at
org.infinispan.remoting.transport.jgroups.CommandAwareRpcDispatcher.invokeRemoteCommand(CommandAwareRpcDispatcher.java:189)
... 48 more
{noformat}
ISPN-2836 added a timeout for the entire MapReduceTask, but this timeout is happening
when the intermediate keys are put into the cache by the map phase. This error does not
occur when the value size is 8KB or larger.
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