You jar statement should be:
"%JAVA_HOME%\bin\jar.exe" -cvf iproof.war *
This will get all of the files into the war.
By the way, you really should look into Ant or Maven 2 to help you with building your
application. (It has been years since I used the jar utilitiy to build a jar/war/ear
file...)
Ant:
http://ant.apache.org/
Maven2:
http://maven.apache.org/
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