I don't know what makes you post this to the JCA forums , this should be asked in the
Transaction forums .
Coming to your question you can try few things
1) Have you tried setting the timeout at the component level ie changing timeout setting
in the jboss-service.xml in the EJB ?
2) You can explicitily set the transaction timeout value in some application specific
configuration file which will later be used by UserTransaction.setTransactionTimeout(..)
http://java.sun.com/j2ee/sdk_1.3/techdocs/api/index.html
In this case you will be using Application Managed Transaction
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