Re: [rules-users] nested boolean expressions using prefixOr

Hi, I’ve encountered problems constructing nested Boolean expressions in Drools 5.0 using the prefixOr syntax. We’re using Drools to build a genome annotation system at the Venter Institute. The following example rule assigns an annotation if there is a blast hit to a gene GB|AAQ16631.1, or either a blast hit to gene GB|AAQ16631.1, or to any gene within 500 bases of a gene with an HMM hit to TIGR00905. I’ve left off some details to focus on how we are structuring the syntax of our prefixOr and prefixAnd expressions. The Drools parser throws errors when it encounters the 2nd “blast_hit” statement in the example below. Our prefixOr and prefixAnd expressions work as expected when we use similar syntax, at least until we attempt to use nested or expressions. *rule* "2645|lysine decarboxylase CadA" *when* (*or* (*and* blast_hit : BlastHit( hitId=='GB|AAQ16631.1') gene1 : Feature( featureId == blast_hit.queryId ) ) (*or* (*and* blast_hit : BlastHit( hitId=='GB|AAQ16631.1' ) gene1 : Feature( featureId == blast_hit.queryId ) ) (*and* hmm_hit1 : HmmHit( hitId=='TIGR00905' ) gene1 : Feature( featureId == hmm_hit1.queryId ) gene2 : Feature( *eval*(gene2.isWithin(gene1, 500)) ) ) ) ) *then* Annotation a = *new* Annotation("lysine decarboxylase CadA"); gene1.addAnnotation(a); *end* Any suggestions are much appreciated. Thanks, Nelson _______________________________________________ rules-users mailing list rules-users(a)lists.jboss.org https://lists.jboss.org/mailman/listinfo/rules-users